| 2025 | "A comparison of deep-sea coral and sponge species distribution models and the impact of ocean currents in the Southern California Bight" in Deep Sea Research Part II: Topical Studies in Oceanography |
| 2023 | "A life cycle model for evaluating estuary residency and recovery potential in Chinook salmon" in Fisheries Research |
| 2023 | "Estimates of Predator Densities Using Mobile DIDSON Surveys: Implications for Survival of Central Valley Chinook Salmon" in North American Journal of Fisheries Management |
| 2023 | "Prey ration, temperature, and predator species influence digestion rates of prey DNA inferred from qPCR and metabarcoding" in Molecular Ecology Resources |
| 2023 | "Toward absolute abundance for conservation applications: Estimating the number of contributors via microhaplotype genotyping of mixed-DNA samples" in Molecular Ecology Resources |
| 2023 | "Vulnerability to climate change of managed stocks in the California Current large marine ecosystem" in Frontiers in Marine Science |
| 2022 | "Editorial: Habitat and distribution models of marine and estuarine species: Advances for a sustainable future" in Frontiers in Marine Science |
| 2022 | "From site to system: Approaches for producing system-wide estimates of fish habitat in large rivers" in River Research and Applications |
| 2021 | "Reduced recruitment of Chinook salmon in a leveed bar-built estuary" in Canadian Journal of Fisheries and Aquatic Sciences |
| 2020 | "Deep-Sea Coral and Sponge Taxa Increase Demersal Fish Diversity and the Probability of Fish Presence" in Frontiers in Marine Science |
| 2020 | "Fish predation on a landscape scale" in Ecosphere |
| 2020 | "Good Practices for Species Distribution Modeling of Deep-Sea Corals and Sponges for Resource Management: Data Collection, Analysis, Validation, and Communication" in Frontiers in Marine Science |
| 2020 | "Outmigration survival of wild Chinook salmon smolts through the Sacramento River during historic drought and high water conditions" in Environmental Biology of Fishes |
| 2019 | "Predation strategies of larval clownfish capturing evasive copepod prey" in Marine Ecology Progress Series |
| 2019 | "Changes in adult Chinook salmon (Oncorhynchus tshawytscha) survival within the lower Columbia River amid increasing pinniped abundance" in Canadian Journal of Fisheries and Aquatic Sciences |
| 2019 | "Linking predation mortality to predator density and survival for out-migrating Chinook Salmon and Steelhead in the lower San Joaquin River and South Delta" in California Department of Fish and Wildlife Report |
| 2018 | "Spatial variability in ocean-mediated growth potential is linked to Chinook salmon survival” in Fisheries Oceanography |
| 2018 | "Estimating spatial–temporal differences in Chinook salmon outmigration survival with habitat- and predation-related covariates" in Canadian Journal of Fisheries and Aquatic Sciences |
| 2017 | "Environmental conditions and prey-switching by a seabird predator impact juvenile salmon survival" in Journal of Marine Systems |
| 2017 | "Chinook salmon smolt mortality zones and the influence of environmental factors on out-migration success in the Sacramento River Basin" in US Fish & Wildlife Service |
| 2016 | "Contrasting patterns in growth and survival of Central Valley fall run Chinook salmon related to hatchery and ocean conditions" in Environmental Biology of Fishes |
| 2016 | "Physical and environmental determinants of juvenile Chinook salmon dispersal in the Northern California Current" in Fisheries Oceanography |
| 2016 | "Early ocean distribution of juvenile Chinook salmon in an upwelling ecosystem" in Fisheries Oceanography |
| 2014 | "Small-Scale Vertical Movements of Summer Flounder Relative to Diurnal, Tidal, and Temperature Changes" in Marine and Coastal Fisheries |
| 2014 | "Estimation of summer flounder mortality rates using mark-recapture data from a recreational angler-tagging program" in Fisheries Research |
| 2014 | "Movement patterns of summer flounder near an artificial reef: effects of fish size and environmental cues" in Fisheries Research |
| 2013 | "Detecting Noncompliance in the Summer Flounder Recreational Fishery Using a Mark–Recapture Growth Model" in North American Journal of Fisheries Management |
| 2008 | "The influence of beam position and swimming direction on fish target strength" in ICES Journal of Marine Science |
| 2007 | "Comparison of in situ, ex situ, and backscatter model estimates of Pacific hake (Merluccius productus) target strength" in Canadian Journal of Fisheries and Aquatic Sciences |
