| 2012 | "A Brief and Biased Look at Spatial Structure in Ecological Models: A Route to Individual-based Models" in Natural Resource Modeling |
| 2012 | "A life cycle approach to modeling sea lamprey population dynamics in the Lake Champlain basin to evaluate alternative control strategies" in Journal of Great Lakes Research |
| 2012 | "Developing a broader scientific foundation for river restoration: Columbia River food webs" in Proceedings of the National Academy of Sciences of the United States of America |
| 2011 | "Tribal Pacific Lamprey Restoration Plan for the Columbia River Basin" in Ecology |
| 2010 | "Random entry forestry: timber management in a time of species conservation" in Natural Resources Modeling |
| 2009 | InStream : the individual-based stream trout research and environmental assessment model |
| 2008 | "Introduction to special issue: Getting the details right, modeling for the management of complex systems" in Natural Resource Modeling |
| 2008 | "An individual-based model for traditional foraging behavior: Investigating effects of environmental fluctuation" in Natural Resource Modeling |
| 2008 | "A Habitat Based Model for the Distribution of Forest Interior Nesting Birds in a Fragmented Landscape" in Natural Resource Modeling |
| 2008 | "Sources, sinks and selectivity" in Natural Resource Modeling |
| 2007 | "Maintaining diversity in an artificially propagated population" in Journal of Biological Dynamics |
| 2006 | "Territorial Dynamics: Persistence in Territorial Species" in Mathematics Magazine |
| 2005 | "A Perron Theorem for positive componentwise bilinear maps" in Linear Algebra and its Applications |
| 2003 | "Introduction to Special Issue: Modeling in Fisheries Science, Past, Present and Future" in Natural Resource Modeling |
| 2002 | "Population-level analysis and validation of an individual-based cutthroat trout model" in Natural Resource Modeling |
| 2002 | "Individual-based Models on the Web" in Natural Resource Modeling |
| 2002 | "Introduction to special issue: What does it take to make individual-based models realize their potential" in Natural Resource Modeling |
| 2001 | "Area-sensitive distributions counteract negative effects of habitat fragmentation on breeding birds" in Ecology |
| 2001 | "Reply to ‘Discussion on ‘Movement rules for Individual-based models of stream fish’'" in Ecological Modelling |
| 2001 | "Area-Sensitive Distributions Counteract Negative Effects of Habitat Fragmentation on Breeding Birds" in Ecology |
| 2000 | "Editorial" in Natural Resource Modeling |
| 1999 | "Sources, Sinks and Selectivity" in Natural Resource Modeling |
| 1999 | "Introduction of Special Issue: Persistence of Structured Populations" in Natural Resource Modeling |
| 1999 | "Movement rules for individual-based models of stream fish" in Ecological Modelling |
| 1999 | "Population viability analysis: a primer on its principal technical concepts" in Ecological Stewardship: A Common Reference For Ecosystem Management |
| 1999 | "A Habitat based model for the distribution of forest interior nesting birds in a framented landscape" in Natural Resource Modeling |
| 1996 | "Optimising the offtake of large herbivores from a multi-species community" in Ecological Modelling |
| 1995 | "Modeling the Effects of Habitat Fragmentation on Source and Sink Demography of Neotropical Migrant Birds" in Conservation Biology |
| 1995 | "Spatially Explicit Population Models: Current Forms and Future Uses" in Ecological Applications |
| 1995 | "Sinks, sources, and spotted owls: A territorial population model with continuous mortality and discrete birth" in Mathematical Biosciences |
| 1994 | "Robert McKelvey, a Multi-Disciplinary Scholar" in Natural Resource Modeling |
| 1994 | "Reserve Design for Territorial Species: The Effects of Patch Size and Spacing on the Viability of the Northern Spotted Owl" in Conservation Biology |
| 1994 | "Random Entry Forestry: timber management in a time of species conservation" in Natural Resource Modeling |
| 1994 | Natural Resource Modeling and Management I |
| 1994 | Natural Resource Modeling and Management II |
| 1993 | "The Owl's Odyssey. A Continuous Model for the Dispersal of Territorial Species" in SIAM Journal on Applied Mathematics |
| 1993 | "Conservation planning for species occupying fragmented landscapes: the case of the northern spotted owl" in Biotic Interactions and Global Change |
| 1993 | A simulation model for the infiltration of heterogeneous sediment into a stream bed |
| 1992 | "Software Review of RAMAS—Age, Stage, Space" in Natural Resource Modeling |
| 1992 | "A Dynamic Analysis of Northern Spotted Owl Viability in a Fragmented Forest Landscape" in Conservation Biology |
| 1988 | "Review of Building Models for Conservation and Wildlife Management" in Natural Resource Modeling |
| 1987 | "Stochastic model for the long-term transport of stored sediment in a river channel" in Water Resources Research |
| 1986 | "The conservation and maintenance of valuable resources: optimal expenditure strategies" in Mathematical Ecology |
| 1986 | "Modeling the transport of stored sediment in a gravel bed river, northwestern California" in USGS Publications |
| 1984 | "Mathematical models of renewable resources" in Pacific Coast Resource Modeling Conference |
| 1983 | "Mathematical models of renewable resource" in Pacific Coast Conference on Mathematical Modeling of Renewable Resources |
| 1982 | "An economic history and analysis of pelagic whaling" in Marine Policy |
| 1977 | "An Environmental Problem" in The Two-Year College Mathematics Journal |
