| 2024 | "Collaborative fisheries research reveals reserve size and age determine efficacy across a network of marine protected areas" in Conservation Letters |
| 2024 | "Participation in collaborative fisheries research improves the perceptions of recreational anglers towards marine protected areas" in Frontiers in Marine Science |
| 2021 | "Seasonal fish communities in three Northern California estuaries" in Western North American Naturalist |
| 2017 | "Baseling characterization of fish communities associated with nearshore rocky reefs in the northern California marine protected area study regions" in California Sea Grant College Program |
| 2017 | Baseline Characterization of Sandy Beach Ecosystems Along the North Coast of California (pdf) |
| 2014 | "Juvenile Rockfish Recruitment in Trinidad Bay, California" in Transactions of the American Fisheries Society |
| 2013 | "Ichthyological Assemblage and Variation in a Northern California Zostera marina Eelgrass Bed" in Northwestern Naturalist |
| 2011 | "Estimating Sockeye Salmon Smolt Flux and Abundance with Side-Looking Sonar" in North American Journal of Fisheries Management |
| 2010 | "Tail-Beat Patterns in Dual-Frequency Identification Sonar Echograms and their Potential Use for Species Identification and Bioenergetics Studies" in Transactions of the American Fisheries Society |
| 2009 | "Recent and Historical Spatial Distributions of Juvenile Rockfish Species in Rocky Intertidal Tide Pools, with Emphasis on Black Rockfish" in Transactions of the American Fisheries Society |
| 2009 | "Brassbuttons: An introduced species in a restored salt marsh (Oregon)" in Ecological Restoration |
| 2009 | "Feeding Habits of Young-of-the-year Black and Copper Rockfish in Eelgrass Habitats of Humboldt Bay, California" in Northwestern Naturalist |
| 2008 | "Temporal variation and feeding ecology of juvenile Sebastes in rocky intertidal tidepools of northern California, with emphasis on Sebastes melanops Girard" in Journal of Fish Biology |
| 2008 | "Classifying Sonar Images: Can a Computer-Driven Process Identify Eels?" in North American Journal of Fisheries Management |
| 2007 | "The Effect of Temperature on Production of Gonads by the Sea Urchin Strongylocentrotus franciscanus Fed Natural and Prepared Diets" in Journal of the World Aquaculture Society |
| 2007 | "The complexity of narrowband echo envelopes as a function of fish side-aspect angle" in ICES Journal of Marine Science |
| 2006 | "Accuracy and precision of fish-count data from a “dual-frequency identification sonar” (DIDSON) imaging system" in ICES Journal of Marine Science |
| 2005 | "Habitat Use by Juvenile Salmonids in the Smith River Estuary, California" in Transactions of the American Fisheries Society |
| 2005 | "Definition of signal-to-noise ratio and its critical role in split-beam measurements" in ICES Journal of Marine Science |
| 2004 | "Optimal partition of sampling effort between observations of fish density and migration speed for a riverine hydroacoustic duration-in-beam method" in Fisheries Research |
| 2002 | Non-Indigenous Marine Species of Humboldt Bay, California |
| 2000 | "Comment on ‘Can stationary bottom split-beam hydroacoustics be used to measure fish swimming speed in situ?’ by Arrhenius et al." in Fisheries Research |
| 2000 | "A tracking transducer for following fish movement in shallow waterand at close range" in Aquatic Living Resources |
| 2000 | "Life history of an exotic sabellid polychaete, Terebrasabella heterouncinata: Influence of temperature and fertilization strategy" in Journal of Shellfish Research |
| 2000 | Genetic Analysis of Klamath River Green Sturgeon (Acipensar [i.e. acipenser] medirostris) |
| 2000 | "Shallow water fisheries sonar: a personal view" in Aquatic Living Resources |
| 1999 | "Oceanic feeding habits of chinook salmon, Oncorhynchus tshawytscha, off northern California" in Fishery Bulletin |
| 1999 | "Ingestion, Absorption, and Gonad Production of Adult Strongylocentrotus franciscanus Fed Different Rations of a Prepared Diet" in Journal of the World Aquaculture Society |
| 1999 | "Shark and salmon movement measured by tracking radar‐type acoustic transducers" in The Journal of the Acoustical Society of America |
| 1998 | "Fixed-location riverine hydroacoustics as a method of enumerating migrating adult Pacific salmon: comparison of split-beam acoustics vs. visual counting" in Aquatic Living Resources |
| 1998 | "A split-beam echo counting model: development of statistical procedures" in ICES Journal of Marine Science |
| 1998 | "The effect of protein concentration in prepared feeds on growth, feeding rate, total organic absorption, and gross assimilation efficiency of the sea urchin Strongylocentrotus franciscanus" in Journal of Shellfish Research |
| 1997 | "Food habits, occurrence, and population structure of the bat ray, Myliobatis californica, in Humboldt Bay, California" in Environmental Biology of Fishes |
| 1996 | "A split-beam echo-counting model for riverine use" in ICES Journal of Marine Science |
| 1995 | "Polymerase chain reaction-restriction fragment length polymorphism analysis of mitochondrial rRNA genes from yellowtail rockfish" in Journal of Fish Biology |
| 1992 | "Reviewed Work: Coastal Oceanography of Washington and Oregon edited by M.R. Landry and B.M. Hickey" in Marine Chemistry |
| 1989 | "Mitochondrial DNA Analysis of Chesapeake Bay White Perch, Morone americana" in Copeia |
| 1988 | "A method of stock identification based on the elemental composition of striped bass Morone saxatilis (Walbaum) otoliths" in Journal of Experimental Marine Biology and Ecology |
| 1984 | "Food Habits, Occurrence, and Population Structure of the Bull Shark, Carcharhinus Leucas, in Florida Coastal Lagoons" in Bulletin of Marine Science |
| 1983 | "Summer-Season Populations of Epibenthic Marine Fishes in the Indian River Lagoon System, Florida" in Florida Scientist |
| 1982 | "Strontium marking of hatchery reared coho salmon, Oncorhynchus kisutch Walbaum, identification of adults" in Journal of Fish Biology |
| 1979 | "Strontium marking of hatchery-reared coho salmon (Oncorhynchm kisutch, Walbaum)" in Journal of Fish Biolody |
