| Miller, Todd W. | 1996 | "First record of the green crab Carcinus maenas, in Humboldt Bay, California" in California Fish and Game |
| Miller III, William | 2019 | "New model of Pleistocene stratigraphy, Outer Coastal Plain, northeastern North Carolina: Patterns and problems" in Southeastern Geology |
| Miller III, William | 2018 | "Middle Pleistocene estuarine deposits, Blounts Bay area, Beaufort County, eastern North Carolina" in Southeastern Geology |
| Miller III, William | 2016 | "New fossil discoveries in the chilhowee group (Southern appalachians, USA): Evidence for the ediacaran-cambrian transition, ‘cambrian agronomic revolution’, and earliest trilobites at the southern margin of Laurentia" in Neues Jahrbuch fur Geologie und Palaontologie - Abhandlungen |
| Miller III, William | 2013 | "Mystery of the graphoglyptids" in Lethaia |
| Miller III, William | 2012 | "On the doctrine of ichnotaxonomic conservatism: The differences between ichnotaxa and biotaxa" in Neues Jahrbuch fur Geologie und Palaontologie - Abhandlungen |
| Miller III, William | 2011 | "A stroll in the forest of the fucoids: Status of Melatercichnus burkei Miller, 1991, the doctrine of ichnotaxonomic conservatism and the behavioral ecology of trace fossil variation" in Palaeogeography, Palaeoclimatology, Palaeoecology |
| Miller III, William | 2009 | "Pteridichnites (= psammichnites) from the upper devonian brallier formation of southwestern virginia, usa: ichnotaxonomic status, constructional morphology, and paleoecology" in Southeastern Geology |
| Miller III, William | 2009 | "Clustering and morphologic variation in Arthrophycus alleghaniensis (Lower Silurian of Virginia, USA) as evidence of behavioral paleoecology" in Neues Jahrbuch fur Geologie und Palaontologie - Abhandlungen |
| Miller III, William | 2008 | "A Bathysiphon (Foraminifera) ‘shell bed’ from the Cretaceous of northern California, USA: Example of a parautochthonous macro-skeletal deposit in deep-ocean turbidites" in Palaeogeography, Palaeoclimatology, Palaeoecology |
| Miller III, William | 2008 | "Rosselia ichnofabric in the Miocene Pullen Formation, northwestern California: Implications for the interpretation of regional tectonics" in Palalos |
| Miller III, William | 2007 | "Complex marine trace fossils" in Lethaia |
| Miller III, William | 2007 | "Paleontological Patterns, Macroecological Dynamics and the Evolutionary Process" in Evolutionary Biology |
| Miller III, William | 2005 | "Giant Bathysiphon (Astrorhizina: Foraminifera) from the Late Cretaceous Hunters Cove Formation, Southwestern Oregon" in Journal of Paleontology |
| Miller III, William | 2005 | "The dynamics of evolutionary stasis" in Palerobiology |
| Miller III, William | 2005 | "The largest fossil foraminiferan: Bathysiphon aaltoi from the Cretaceous of California, USA" in Neues Jahrbuch fuer Geologie und Palaeontologie Monatshefte |
| Miller III, William | 2004 | "Alternation of ecologic regimes in a deep-marine carbonate basin: calciturbidite trace fossils from the Cretaceous Scaglia Rossa, northeastern Italy" in Palaeogeography, Palaeoclimatology, Palaeoecology |
| Miller III, William | 2004 | "Assembly of large ecologic systems: macroevolutionary connections" in Neues Jahrbuch fuer Geologie und Palaeontologie Monatshefte |
| Miller III, William | 2003 | "Paleobiology of complex trace fossils" in Palaeogeography, Palaeoclimatology, Palaeoecology |
| Miller III, William | 2003 | "A place for phyletic evolution within the theory of punctuated equilibria: Eldredge pathways" in Neues Jahrbuch fuer Geologie und Palaeontologie Monatshefte |
