| Miller III, William | 2005 | "The largest fossil foraminiferan: Bathysiphon aaltoi from the Cretaceous of California, USA" in Neues Jahrbuch fuer Geologie und Palaeontologie Monatshefte |
| Miller III, William | 2004 | "Alternation of ecologic regimes in a deep-marine carbonate basin: calciturbidite trace fossils from the Cretaceous Scaglia Rossa, northeastern Italy" in Palaeogeography, Palaeoclimatology, Palaeoecology |
| Miller III, William | 2004 | "Assembly of large ecologic systems: macroevolutionary connections" in Neues Jahrbuch fuer Geologie und Palaeontologie Monatshefte |
| Miller III, William | 2003 | "Paleobiology of complex trace fossils" in Palaeogeography, Palaeoclimatology, Palaeoecology |
| Miller III, William | 2003 | "A place for phyletic evolution within the theory of punctuated equilibria: Eldredge pathways" in Neues Jahrbuch fuer Geologie und Palaeontologie Monatshefte |
| Miller III, William | 2003 | New interpretations of complex trace fossils: Special Issue |
| Miller III, William | 2002 | "Regional ecosystems and the origin of species" in Neues Jahrbuch fuer Geologie und Palaeontologie Abhandlungen |
| Miller III, William | 2002 | "Complex trace fossils as extended organisms: a proposal" in Neues Jahrbuch fuer Geologie und Palaeontologie Monatshefte |
| Miller III, William | 2001 | "Thalassinoides-Phycodes compound burrow systems in Paleocene deep-water limestone" in Palaeogeography, Palaeoclimatology, Palaeoecology |
| Miller III, William | 2001 | "The structure of species, outcomes of speciation and the ‘species problem’: ideas for paleobiology" in Palaeogeography, Palaeoclimatology, Palaeoecology |
| Miller III, William | 2001 | "What's in a name? Ecologic entities and the marine paleoecologic record" in Evolutionary paleoecology: the ecological context of macroevolutionary change |
| Miller III, William | 2000 | "Trace fossil assemblages in Cretaceous-Paleogene pelagic limestones of the Belluno area, northeastern Italy" in Memorie di Scienze Geologiche |
| Miller III, William | 1999 | "Sedimentology of the Pliocene Upper Onzole Formation, an inner-trench slope succession in northwestern Ecuador" in Journal of South American Earth Sciences |
| Miller III, William | 1999 | "Small pits associated with renilla (Cnidaria: Pennatulacea) on a modern low‐energy sandflat, Kiawah Island, South Carolina, U.S.A." in Ichnos |
| Miller III, William | 1998 | "Complex marine trace fossils" in Lethaia |
| Miller III, William | 1998 | "Large Phymatoderma in pliocene slope deposits, northwestern Ecuador: Associated ichnofauna, fabrication, and behavioral ecology" in Ichnos |
| Miller III, William | 1998 | "Anatomy of a complex trace fossil: Phymatoderma from Pliocene bathyal mudstone, northwestern Ecuador" in Paleontological Research |
| Miller III, William | 1997 | "Is Bathysiphon aaltoi Miller, 1986 the largest foraminiferid?" in Tulane Studies in Geology and Paleontology |
| Miller III, William | 1997 | "Trail-producing behaviour of Oliva sayana (Gastropoda) in the lower foreshore at Bogue Banks, North Carolina" in Tulane Studies in Geology and Paleontology |
| Miller III, William | 1996 | "Evolution of a trench-slope basin within the Cascadia subduction margin: the Neogene Humboldt Basin, California" in Sedimentology |
| Miller III, William | 1996 | "Ichnologic note: Sabellariid polychaete squatters in Teredolites: Possible source of composite ichnotaxa in xylic substrates" in Ichnos |
| Miller III, William | 1996 | "Ecology of coordinated stasis" in Palaeogeography Palaeoclimatology Palaeoecology |
| Miller III, William | 1996 | "Sabellariid polychaete squatters in Teredolites: possible source of composite ichnotaxa in xylic substrates" in Ichnos |
| Miller III, William | 1995 | "Examples of Mesozoic and Cenozoic Bathysiphon (Foraminiferida) from the Pacific Rim and the Taxonomic Status of Terebellina Ulrich, 1904" in Journal of Paleontology |
| Miller III, William | 1995 | "'Terebellina' (Schaubcylindrichnus freyi ichnosp. nov.) in Pleistocene outer‐shelf mudrocks of northern California" in Ichnos |
