| 2015 | "Understanding anadromy as an individual adaptive behaviour: theory and its consequences. In: Sea Trout: Science & Management" in Proceedings of the 2nd International Sea Trout Symposium |
| 2014 | "Effects of streamflow diversion on a fish population: combining empirical data and individual-based models in a site-specific evaluation" in North American Journal of Fisheries Management |
| 2014 | "Feeding modes in stream salmonid population models: is drift feeding the whole story?" in Environmental Biology of Fishes |
| 2014 | "Facultative anadromy in salmonids: linking habitat, individual life history decisions, and population-level consequences" in Canadian Journal of Fisheries and Aquatic Sciences |
| 2013 | "Trait-mediated trophic interactions: is foraging theory keeping up?" in Trends in Ecology and Evolution |
| 2013 | "Contrast of degraded and restored stream habitat using an individual-based salmon model" in North American Journal of Fisheries Management |
| 2013 | "Seasonal and among-stream variation in predator encounter rates for fish prey" in Transactions of the American Fisheries Society |
| 2013 | "Local-scale invasion pathways and small founder numbers in introduced Sacramento pikeminnow (Ptychocheilus grandis)" in Conservation Genetics |
| 2013 | "Seasonal and Among-Stream Variation in Predator Encounter Rates for Fish Prey" in Transactions of the American Fisheries Society |
| 2012 | "Estimating migratory fish distribution from altitude and basin area: a case study in a larger Neotropical river" in Freshwater Biology |
| 2011 | "Estimating Multi-Factor Cumulative Watershed Effects on Fish Populations with an Individual-Based Model" in Fisheries Magazine |
| 2011 | "Small founding number and low genetic diversity in an introduced species exhibiting limited invasion success (speckled dace, Rhinichthys osculus)" in Ecology and Evolution |
| 2011 | "Historical occurrence of coho salmon (Oncorhynchus kisutch) in streams of the Santa Cruz Mountain region of California: response to an Endangered Species Act petition to delist coho salmon south of San Francisco Bay" in NOAA Technical Memorandum |
| 2011 | "Importance of fish behaviour in modelling conservation problems: food limitation as an example" in Journal of Fish Biology |
| 2011 | "Effects of passage barriers on demographics and stability properties of a virtual trout population" in River Research and Applications |
| 2010 | "Microbial enzyme activity, nutrient uptake and nutrient limitation in forested streams" in Freshwater Biology |
| 2010 | "Carcass Addition Does Not Enhance Juvenile Salmonid Biomass, Growth, or Retention in Six Northwestern California Streams" in North American Journal of Fisheries Management |
| 2009 | "The effect of deposited fine sediment on summer survival and growth of trout in riffles of a small stream" in North American Journal of Fisheries Management |
| 2009 | "Exploring the persistence of stream-dwelling trout populations under alternative real-world turbidity regimes with an individual-based model" in Transactions of the American Fisheries Society |
| 2009 | "InSTREAM: The Individual-Based Stream Trout Research and Environmental Assessment Model" in USDA Forest Service Pacific Southwest Research Station General Technical Report |
