| 2023 | "The Salmons’ History Lesson: How Historical Events and Policy Drivers Affect PNW Salmon" in The Osprey: The International Journal of Salmon and Steelhead Conservation |
| 2022 | "The Great Pacific Northwest Salmon Conundrum" in Water Resources IMPACT |
| 2020 | Ecological Policy - Case Studies |
| 2020 | Don’t Fence Me In: A Memoir |
| 2017 | Chapter 3 "Science and Salmon Recovery" in New Strategies for Wicked Problems: Science and Solutions in the 21st Century |
| 2016 | "Keep Science and Scientists Credible: Avoid Stealth Policy Advocacy" in Bulletin of the Ecological Society of Australia |
| 2015 | "Forecasting the Most Likely Status of Wild Salmon in the California Central Valley in 2100" in San Francisco Estuary and Watershed Science |
| 2015 | "Wild salmon recovery and inconvenient reality along the west coast of North America: indulgences atoning for guilt?" in Wiley Interdisciplinary Reviews: Water |
| 2013 | "Saving Wild Salmon: A 165-Year Policy Conundrum" in Dubach Workshop: Science and Scientists in the Contemporary Poliy Process |
| 2013 | "Normative Science: Scientists as Stealth Policy Advocates" in Terra Magazine |
| 2012 | "Pacific Coast Salmon: Past, Present, and Future" in Legacy: Journal of Wild Game Fish Conservation |
| 2009 | "Is Science Biased Toward Natural?" in Northwest Science |
| 2009 | Chapter 38 "Challenges to Sustaining Diadromous Fishes Through 2100: Lessons Learned from Western North America" in Challenges for Diadromous Fishes in a Dynamic Global Environment |
| 2009 | "Salmon in Western North America: Assessing the Future" in Encyclopedia of Earth |
| 2009 | "Salmon Decline in Western North America: Historical Context" in Encyclopedia of Earth |
| 2008 | "What Is a Healthy Ecosystem?" in Our Planet, Our Home |
| 2008 | "Delusional Reality about West Coast Salmon" in Our Planet, Our Home |
| 2008 | "Does the Public Expect Too Much from Science?" in Our Planet, Our Home |
| 2008 | "Review: Scientists and Democracy" in BioScience |
| 2008 | "The Science-Policy Interface: What Is an Appropriate Role for Professional Societies" in BioScience |
| 2008 | "Saving West Coast Salmon" in Stream Notes |
| 2008 | "The Scourge of Normative Science" in Our Planet, Our Home |
| 2007 | "Policy Advocacy in Science: Prevalence, Perspectives, and Implications for Conservation Biologists" in Conservation Biology |
| 2007 | "Science, Scientists, and Policy Advocacy" in Conservation Biology |
| 2007 | "The Salmon 2100 Project: Options to Protect, Restore, and Enhance Salmon Along the West Coast of North America" in American Fisheries Society Annual Meeting |
| 2006 | Salmon 2100: The Future of Wild Pacific Salmon |
| 2006 | Chapter 1 "Introduction: The Challenge of Restoring Wild Salmon" in Salmon 2100: The Future of Wild Pacific Salmon |
| 2006 | Chapter 2 "Wild Salmon in Western North America: The Historical and Policy Context" in Salmon 2100: The Future of Wild Pacific Salmon |
| 2006 | Chapter 3 "Wild Salmon in Western North America: Forecasting the Most Likely Status in 2100" in Salmon 2100: The Future of Wild Pacific Salmon |
| 2006 | Chapter 27 "Can We Get There from Here? Salmon in the 21st Century" in Salmon 2100: The Future of Wild Pacific Salmon |
| 2006 | Chapter 28 "Without a Change of Direction, We’ll Get Where We’re Going: Writing a Future for Wild Salmon" in Salmon 2100: The Future of Wild Pacific Salmon |
| 2006 | "Axioms of Ecological Policy" in Fisheries |
| 2006 | "Policy Options to Reverse the Decline of Wild Pacific Salmon" in Fisheries |
| 2006 | "Restoring Wild Salmon to the Pacific Northwest: Framing the Risk Question" in Proceedings of the Ninth Biennial Watershed Management Conference |
| 2006 | "Finding a Place for Expert Opinion in Salmon Recovery" in American Fisheries Society Annual Meeting |
| 2006 | "Defining What Constitutes a Wild Salmon" in American Fisheries Society Annual Meeting |
| 2005 | "Estimating the Size of Historical Oregon Salmon Runs" in Reviews in Fisheries Science |
| 2005 | "Fisheries: History, Science, and Management" in Water Encyclopedia: Surface and Agricultural Water |
| 2005 | "Economic Growth and Salmon Recovery: An Irreconcilable Conflict?" in Fisheries |
| 2004 | "Reviewed Work: Fishes and Forestry — Worldwide Watershed Interactions and Management by Thomas G. Northcote and Gordon F. Hartman" in Environmental Reviews |
| 2004 | "Restoration Ecology: The Challenge of Social Values and Expectations" in Frontiers in Ecology and the Environment |
| 2004 | "Normative Science" in Energy & Environment |
| 2004 | "Review of Ecosystem Management: Adaptive, Community-Based Conservation by Gary K. Meffe, Larry A. Nielsen, Richard L. Knight, and Dennis A. Schenborn" in Fisheries |
| 2004 | "A Salmon-Centric View of the Twenty-First Century in the Western United States" in Proceedings of the World Summit on Salmon |
| 2003 | "Adding Nutrients to Enhance Salmon Runs: Developing a Coherent Public Policy" in Fisheries |
| 2003 | Chapter 22 "Appropriate Use of Ecosystem Health and Normative Science in Ecological Policy" in Managing for Healthy Ecosystems |
| 2003 | Chapter 20 "Setting Goals and Objectives in Managing for Healthy Ecosystems" in Managing for Healthy Ecosystems |
| 2003 | Chapter 9 "Watershed Restoration – Adaptive Decision Making in the Face of Uncertainty" in Strategies for Restoring River Ecosystems: Sources of Variability and Uncertainty in Natural and Managed Systems |
| 2003 | "Nutrient Addition to Restore Salmon Runs: Considerations for Developing Environmental Protection Policies and Regulations" in Nutrients in Salmonid Ecosystems: Sustaining Production and Biodiversity |
| 2003 | "Will Pacific Salmon Survive the Next Century?" in Restoration |
