| 2025 | "Model evaluation of Stage 0 river treatment on juvenile spring Chinook in the South Fork McKenzie River, Oregon" in Ecosphere |
| 2023 | "Habitat selection by an avian predator of insect pests on Jamaican coffee farms" in Global Ecology and Conservation |
| 2023 | "Spatial scales in instream flow modeling: Why and how to use ecologically appropriate resolutions" in River Research and Applications |
| 2023 | "Can thermal refuges save salmonids? Simulation of cold‐pool benefits to salmonid populations" in Transactions of the American Fisheries Society |
| 2023 | "Modifying and parameterizing the individual-based model inSTREAM for Atlantic salmon and brown trout in the regulated Gullspång River, Sweden" in MethodsX |
| 2023 | "Individual-based modelling of hydropeaking effects on brown trout and Atlantic salmon in a regulated river" in River Research and Applications |
| 2022 | "Suboptimal foraging theory: How inaccurate predictions and approximations can make better models of adaptive behavior" in Ecology |
| 2021 | "InSTREAM 7: Instream flow assessment and management model for stream trout" in River Research and Applications |
| 2021 | "All Fish, All the Time: A Good General Objective for Fish Passage Projects?" in Fisheries Magazine |
| 2021 | "Keeping modelling notebooks with TRACE: Good for you and good for environmental research and management support" in Envrionmetnal Modelling & Software |
| 2021 | "Modeling Atlantic salmon (Salmo salar) and brown trout (S. trutta) population responses and interactions under increased minimum flow in a regulated river" in Ecological Engineering |
| 2021 | "What We Don’t Know About the Effects of Temperature on Salmonid Growth" in Transactions of the American Fisheries Society |
| 2021 | "Importance of the Daily Light Cycle in Population–Habitat Relations: A Simulation Study" in Transactions of the American Fisheries Society |
| 2020 | "Contingent trade-off decisions with feedbacks in cyclical environments: testing alternative theories" in Behavioral Ecology |
| 2020 | "The ODD Protocol for Describing Agent-Based and Other Simulation Models: A Second Update to Improve Clarity, Replication, and Structural Realism" in Journal of Artificial Societies and Social Simulation |
| 2020 | Modeling Populations Of Adaptive Individuals |
| 2020 | "Bridging Levels from Individuals to Communities and Ecosystems: Including Adaptive Behavior and Feedbacks in Ecological Theory and Models" in Bulletin of the Ecological Society of America |
| 2019 | "Mechanistic simulations predict that thermal and hydrological effects of climate change on Mediterranean trout cannot be offset by adaptive behaviour, evolution, and increased food production" in Science of the Total Environment |
| 2019 | "Bridging Levels from Individuals to Communities and Ecosystems: Including Adaptive Behavior and Feedbacks in Ecological Theory and Models" in Bulletin |
| 2018 | "Eco-evolutionary responses to recreational fishing under different harvest regulations" in Ecology and Evolution |
| 2017 | "Why It Is Time to Put PHABSIM Out to Pasture: Response to Comments 1 and 2" in Fisheries Magazine |
| 2017 | "Improving Execution Speed of Models Implemented in NetLogo" in Journal of Artificial Societies and Social Simulation |
| 2017 | "Next-Generation Individual-Based Models Integrate Biodiversity and Ecosystems: Yes We Can, and Yes We Must" in Ecosystems |
| 2016 | "Why It Is Time to Put PHABSIM Out to Pasture" in Fisheries Magazine |
| 2016 | "New predictions from old theory: Emergent effects of multiple stressors in a model of piscivorous fish" in Ecological Modelling |
| 2016 | "Modeling potential river management conflicts between frogs and salmonids" in Canadian Journal of Fisheries and Aquatic Sciences |
| 2016 | "InSTREAM-Gen: Modelling eco-evolutionary dynamics of trout populations under anthropogenic environmental change" in Ecological Modelling |
| 2015 | "Making predictions in a changing world: The benefits of individual-based ecology" in Bioscience |
| 2015 | "Legacy effects of wildfire on stream thermal regimes and rainbow trout ecology: an integrated analysis of observation and individual-based models" in Freshwater Science |
| 2015 | "Effects of Spatial Extent on Modeled Relations between Habitat and Anadromous Salmonid Spawning Success" in Transactions of the American Fisheries Society |
| 2015 | "The role of the geophysical template and environmental regimes in controlling stream-living trout populations" in Canadian Journal of Fisheries and Aquatic Sciences |
| 2015 | "Local Variability Mediates Vulnerability of Trout Populations to Land Use and Climate Change" in PLOS One |
| 2015 | "Assessing Pesticide Risks to Threatened and Endangered Species Using Population Models: Findings and Recommendations from a CropLife America Science Forum" in Integrated Environmental Assessment and Management |
| 2014 | "Towards Better Modelling and Decision Support: Documenting Model Development, Testing, and Analysis Using Trace" in Ecological Modelling |
| 2014 | "Effects of Streamflow Diversion on a Fish Population: Combining Empirical Data and Individual-Based Models in a Site-Specific Evaluation" in North American Journal of Fisheries Management |
| 2014 | "Effects of land use on bird populations and pest control services on coffee farms" in Proceedings of the National Academy of Sciences |
| 2014 | "Facultative anadromy in salmonids: linking habitat, individual life history decisions, and population-level consequences" in Canadian Journal of Fisheries and Aquatic Sciences |
| 2014 | "Feeding modes in stream salmonid population models: is drift feeding the whole story?" in Environmental Biology of Fishes |
| 2013 | "Developing and Testing TernCOLONY 1.0: An Individual-based Model of Least Tern Reproduction" in LANG RAILSBACK AND ASSOCIATES ARCATA CA |
| 2013 | "Contrast of Degraded and Restored Stream Habitat Using an Individual-Based Salmon Model" in North American Journal of Fisheries Management |
| 2013 | "Trait-mediated trophic interactions: is foraging theory keeping up?" in Trends in Ecology & Evolution |
| 2012 | Agent-based and individual-based modeling : a practical introduction |
| 2012 | "Pattern-oriented modelling: a ‘multi-scope’ for predictive systems ecology" in Philosophical Transactions of the Royal Society B: Biological Sciences |
| 2012 | "Individual-Based Ecology" in Encyclopedia of Theoretical Ecology |
| 2012 | "Effects of Passage Barriers on Demographics and Stability Properties of a Virtual Trout Population" in River Research and Applications |
| 2011 | "Estimating Multi-Factor Cumulative Watershed Effects on Fish Populations with an Individual-Based Model" in Fisheries Magazine |
| 2011 | "Importance of fish behaviour in modelling conservation problems: food limitation as an example" in Journal of Fish Biology |
| 2011 | "Pattern-oriented modeling of bird foraging and pest control in coffee farms" in Ecological Modelling |
| 2010 | "The ODD protocol: A review and first update" in Ecological Modelling |
| 2009 | "Model the Real, Artificial, or Stylized Iguana? Artificial Life and Adaptive Behavior Can Be Linked Through Pattern-Oriented Modeling" in Adaptive Behavior |
