| 2009 | "Can remote high-resolution mapping help individual-based fish population models go up-scale?" in AGU Fall Meeting |
| 2008 | "Use of benthic prey by salmonids under turbid conditions in a laboratory stream" in Transactions of the American Fisheries Society |
| 2007 | "Winter feeding success of stream trout under different streamflow and turbidity conditions" in Transactions of the American Fisheries Society |
| 2007 | "Estimating multi-factor cumulative watershed effects on fish populations with an individual-based model" in Fisheries |
| 2006 | "Reduced Streamflow Lowers Dry-Season Growth of Rainbow Trout in a Small Stream" in Transactions of the American Fisheries Society |
| 2005 | "Effects of riparian canopy opening and salmon carcass addition on the abundance and growth of resident salmonids" in Canadian Journal of Fisheries and Aquatic Sciences |
| 2005 | "Tests of theory for diel variation in salmonid feeding activity and habitat use" in Ecology |
| 2005 | "Habitat specific biomass, survival and growth of trout (Oncorhynchus mykiss) during summer in a small coastal stream" in Canadian Journal of Fisheries and Aquatic Sciences |
| 2004 | "An emergent multiple predator effect may enhance biotic resistance in a stream fish assemblage" in Ecology |
| 2003 | "What can habitat preference models tell us? Tests using a virtual trout population" in Ecological Applications |
| 2003 | "Basin-scale patterns in the drift of embryonic and larval fishes and lamprey ammocoetes in two coastal rivers" in Environmental Biology of Fishes |
| 2003 | "Spatial, seasonal and body size-dependent variation in the diet of introduced Sacramento pikeminnow in the Eel River, northwestern California" in California Fish & Game |
| 2002 | "Temperature-dependent competition between juvenile steelhead and Sacramento pikeminnow" in Transactions of the American Fisheries Society |
| 2002 | "Population level analysis and validation of an individual based cutthroat trout model" in Natural Resource Modeling |
| 2002 | "Comparison of salmonid habitat selection objectives in an individual-based model" in Ecology |
| 2002 | "Habitat relationships and larval drift of native and nonindigenous fishes in neighboring tributaries of a coastal California river" in Transactions of the American Fisheries Society |
| 2001 | "Effects of introduced Sacramento pikeminnow, Ptychocheilus grandis, on native prickly sculpin, Cottus asper and coastrange sculpin, C. aleuticus, in a coastal river of northwestern California" in Freshwater Biology |
| 2001 | "Distribution of juvenile coho salmon (Oncorhynchus kisutch) in relation to water temperatures in tributaries of a northern California watershed: determining management thresholds for an impaired cold-water adapted fauna" in North American Journal of Fisheries Management |
| 1999 | "Success and failure of non-indigenous aquatic species in stream systems: case studies from California and Hawaii" in Nonindigenous Fresh Water Organisms: Vectors, Biology, and Impacts |
| 1999 | "Use of habitat by prickly sculpin, Cottus asper and coastrange sculpin, C. aleuticus, in the mainstem Smith River, northwestern California" in Copeia |
